tools/signapk/SignApk.java - SHIFTPHONES/android_build - Gitiles

 /*
  * Copyright (C) 2008 The Android Open Source Project
  *
  * Licensed under the Apache License, Version 2.0 (the "License");
  * you may not use this file except in compliance with the License.
  * You may obtain a copy of the License at
  *
  *      http://www.apache.org/licenses/LICENSE-2.0
  *
  * Unless required by applicable law or agreed to in writing, software
  * distributed under the License is distributed on an "AS IS" BASIS,
  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  * See the License for the specific language governing permissions and
  * limitations under the License.
  */

 package com.android.signapk;

 import sun.misc.BASE64Encoder;
 import sun.security.pkcs.ContentInfo;
 import sun.security.pkcs.PKCS7;
 import sun.security.pkcs.SignerInfo;
 import sun.security.x509.AlgorithmId;
 import sun.security.x509.X500Name;

 import java.io.BufferedReader;
 import java.io.ByteArrayOutputStream;
 import java.io.DataInputStream;
 import java.io.File;
 import java.io.FileInputStream;
 import java.io.FileOutputStream;
 import java.io.FilterOutputStream;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.InputStreamReader;
 import java.io.OutputStream;
 import java.io.PrintStream;
 import java.security.AlgorithmParameters;
 import java.security.DigestOutputStream;
 import java.security.GeneralSecurityException;
 import java.security.Key;
 import java.security.KeyFactory;
 import java.security.MessageDigest;
 import java.security.PrivateKey;
 import java.security.Signature;
 import java.security.SignatureException;
 import java.security.cert.Certificate;
 import java.security.cert.CertificateFactory;
 import java.security.cert.X509Certificate;
 import java.security.spec.InvalidKeySpecException;
 import java.security.spec.KeySpec;
 import java.security.spec.PKCS8EncodedKeySpec;
 import java.util.ArrayList;
 import java.util.Collections;
 import java.util.Date;
 import java.util.Enumeration;
 import java.util.List;
 import java.util.Map;
 import java.util.TreeMap;
 import java.util.jar.Attributes;
 import java.util.jar.JarEntry;
 import java.util.jar.JarFile;
 import java.util.jar.JarOutputStream;
 import java.util.jar.Manifest;
 import java.util.regex.Pattern;
 import javax.crypto.Cipher;
 import javax.crypto.EncryptedPrivateKeyInfo;
 import javax.crypto.SecretKeyFactory;
 import javax.crypto.spec.PBEKeySpec;

 /**
  * Command line tool to sign JAR files (including APKs and OTA updates) in
  * a way compatible with the mincrypt verifier, using SHA1 and RSA keys.
  */
 class SignApk {
     private static final String CERT_SF_NAME = "META-INF/CERT.SF";
     private static final String CERT_RSA_NAME = "META-INF/CERT.RSA";

     // Files matching this pattern are not copied to the output.
     private static Pattern stripPattern =
             Pattern.compile("^META-INF/(.*)[.](SF|RSA|DSA)$");

     private static X509Certificate readPublicKey(File file)
             throws IOException, GeneralSecurityException {
         FileInputStream input = new FileInputStream(file);
         try {
             CertificateFactory cf = CertificateFactory.getInstance("X.509");
             return (X509Certificate) cf.generateCertificate(input);
         } finally {
             input.close();
         }
     }

     /**
      * Reads the password from stdin and returns it as a string.
      *
      * @param keyFile The file containing the private key.  Used to prompt the user.
      */
     private static String readPassword(File keyFile) {
         // TODO: use Console.readPassword() when it's available.
         System.out.print("Enter password for " + keyFile + " (password will not be hidden): ");
         System.out.flush();
         BufferedReader stdin = new BufferedReader(new InputStreamReader(System.in));
         try {
             return stdin.readLine();
         } catch (IOException ex) {
             return null;
         }
     }

     /**
      * Decrypt an encrypted PKCS 8 format private key.
      *
      * Based on ghstark's post on Aug 6, 2006 at
      * http://forums.sun.com/thread.jspa?threadID=758133&messageID=4330949
      *
      * @param encryptedPrivateKey The raw data of the private key
      * @param keyFile The file containing the private key
      */
     private static KeySpec decryptPrivateKey(byte[] encryptedPrivateKey, File keyFile)
             throws GeneralSecurityException {
         EncryptedPrivateKeyInfo epkInfo;
         try {
             epkInfo = new EncryptedPrivateKeyInfo(encryptedPrivateKey);
         } catch (IOException ex) {
             // Probably not an encrypted key.
             return null;
         }

         char[] password = readPassword(keyFile).toCharArray();

         SecretKeyFactory skFactory = SecretKeyFactory.getInstance(epkInfo.getAlgName());
         Key key = skFactory.generateSecret(new PBEKeySpec(password));

         Cipher cipher = Cipher.getInstance(epkInfo.getAlgName());
         cipher.init(Cipher.DECRYPT_MODE, key, epkInfo.getAlgParameters());

         try {
             return epkInfo.getKeySpec(cipher);
         } catch (InvalidKeySpecException ex) {
             System.err.println("signapk: Password for " + keyFile + " may be bad.");
             throw ex;
         }
     }

     /** Read a PKCS 8 format private key. */
     private static PrivateKey readPrivateKey(File file)
             throws IOException, GeneralSecurityException {
         DataInputStream input = new DataInputStream(new FileInputStream(file));
         try {
             byte[] bytes = new byte[(int) file.length()];
             input.read(bytes);

             KeySpec spec = decryptPrivateKey(bytes, file);
             if (spec == null) {
                 spec = new PKCS8EncodedKeySpec(bytes);
             }

             try {
                 return KeyFactory.getInstance("RSA").generatePrivate(spec);
             } catch (InvalidKeySpecException ex) {
                 return KeyFactory.getInstance("DSA").generatePrivate(spec);
             }
         } finally {
             input.close();
         }
     }

     /** Add the SHA1 of every file to the manifest, creating it if necessary. */
     private static Manifest addDigestsToManifest(JarFile jar)
             throws IOException, GeneralSecurityException {
         Manifest input = jar.getManifest();
         Manifest output = new Manifest();
         Attributes main = output.getMainAttributes();
         if (input != null) {
             main.putAll(input.getMainAttributes());
         } else {
             main.putValue("Manifest-Version", "1.0");
             main.putValue("Created-By", "1.0 (Android SignApk)");
         }

         BASE64Encoder base64 = new BASE64Encoder();
         MessageDigest md = MessageDigest.getInstance("SHA1");
         byte[] buffer = new byte[4096];
         int num;

         // We sort the input entries by name, and add them to the
         // output manifest in sorted order.  We expect that the output
         // map will be deterministic.

         TreeMap<String, JarEntry> byName = new TreeMap<String, JarEntry>();

         for (Enumeration<JarEntry> e = jar.entries(); e.hasMoreElements(); ) {
             JarEntry entry = e.nextElement();
             byName.put(entry.getName(), entry);
         }

         for (JarEntry entry: byName.values()) {
             String name = entry.getName();
             if (!entry.isDirectory() && !name.equals(JarFile.MANIFEST_NAME) &&
                 !name.equals(CERT_SF_NAME) && !name.equals(CERT_RSA_NAME) &&
                 (stripPattern == null ||
                  !stripPattern.matcher(name).matches())) {
                 InputStream data = jar.getInputStream(entry);
                 while ((num = data.read(buffer)) > 0) {
                     md.update(buffer, 0, num);
                 }

                 Attributes attr = null;
                 if (input != null) attr = input.getAttributes(name);
                 attr = attr != null ? new Attributes(attr) : new Attributes();
                 attr.putValue("SHA1-Digest", base64.encode(md.digest()));
                 output.getEntries().put(name, attr);
             }
         }

         return output;
     }

     /** Write to another stream and also feed it to the Signature object. */
     private static class SignatureOutputStream extends FilterOutputStream {
         private Signature mSignature;
         private int mCount;

         public SignatureOutputStream(OutputStream out, Signature sig) {
             super(out);
             mSignature = sig;
             mCount = 0;
         }

         @Override
         public void write(int b) throws IOException {
             try {
                 mSignature.update((byte) b);
             } catch (SignatureException e) {
                 throw new IOException("SignatureException: " + e);
             }
             super.write(b);
             mCount++;
         }

         @Override
         public void write(byte[] b, int off, int len) throws IOException {
             try {
                 mSignature.update(b, off, len);
             } catch (SignatureException e) {
                 throw new IOException("SignatureException: " + e);
             }
             super.write(b, off, len);
             mCount += len;
         }

         public int size() {
             return mCount;
         }
     }

     /** Write a .SF file with a digest of the specified manifest. */
     private static void writeSignatureFile(Manifest manifest, SignatureOutputStream out)
             throws IOException, GeneralSecurityException {
         Manifest sf = new Manifest();
         Attributes main = sf.getMainAttributes();
         main.putValue("Signature-Version", "1.0");
         main.putValue("Created-By", "1.0 (Android SignApk)");

         BASE64Encoder base64 = new BASE64Encoder();
         MessageDigest md = MessageDigest.getInstance("SHA1");
         PrintStream print = new PrintStream(
                 new DigestOutputStream(new ByteArrayOutputStream(), md),
                 true, "UTF-8");

         // Digest of the entire manifest
         manifest.write(print);
         print.flush();
         main.putValue("SHA1-Digest-Manifest", base64.encode(md.digest()));

         Map<String, Attributes> entries = manifest.getEntries();
         for (Map.Entry<String, Attributes> entry : entries.entrySet()) {
             // Digest of the manifest stanza for this entry.
             print.print("Name: " + entry.getKey() + "\r\n");
             for (Map.Entry<Object, Object> att : entry.getValue().entrySet()) {
                 print.print(att.getKey() + ": " + att.getValue() + "\r\n");
             }
             print.print("\r\n");
             print.flush();

             Attributes sfAttr = new Attributes();
             sfAttr.putValue("SHA1-Digest", base64.encode(md.digest()));
             sf.getEntries().put(entry.getKey(), sfAttr);
         }

         sf.write(out);

         // A bug in the java.util.jar implementation of Android platforms
         // up to version 1.6 will cause a spurious IOException to be thrown
         // if the length of the signature file is a multiple of 1024 bytes.
         // As a workaround, add an extra CRLF in this case.
         if ((out.size() % 1024) == 0) {
             out.write('\r');
             out.write('\n');
         }
     }

     /** Write a .RSA file with a digital signature. */
     private static void writeSignatureBlock(
             Signature signature, X509Certificate publicKey, OutputStream out)
             throws IOException, GeneralSecurityException {
         SignerInfo signerInfo = new SignerInfo(
                 new X500Name(publicKey.getIssuerX500Principal().getName()),
                 publicKey.getSerialNumber(),
                 AlgorithmId.get("SHA1"),
                 AlgorithmId.get("RSA"),
                 signature.sign());

         PKCS7 pkcs7 = new PKCS7(
                 new AlgorithmId[] { AlgorithmId.get("SHA1") },
                 new ContentInfo(ContentInfo.DATA_OID, null),
                 new X509Certificate[] { publicKey },
                 new SignerInfo[] { signerInfo });

         pkcs7.encodeSignedData(out);
     }

     private static void signWholeOutputFile(byte[] zipData,
                                             OutputStream outputStream,
                                             X509Certificate publicKey,
                                             PrivateKey privateKey)
         throws IOException, GeneralSecurityException {

         // For a zip with no archive comment, the
         // end-of-central-directory record will be 22 bytes long, so
         // we expect to find the EOCD marker 22 bytes from the end.
         if (zipData[zipData.length-22] != 0x50 ||
             zipData[zipData.length-21] != 0x4b ||
             zipData[zipData.length-20] != 0x05 ||
             zipData[zipData.length-19] != 0x06) {
             throw new IllegalArgumentException("zip data already has an archive comment");
         }

         Signature signature = Signature.getInstance("SHA1withRSA");
         signature.initSign(privateKey);
         signature.update(zipData, 0, zipData.length-2);

         ByteArrayOutputStream temp = new ByteArrayOutputStream();

         // put a readable message and a null char at the start of the
         // archive comment, so that tools that display the comment
         // (hopefully) show something sensible.
         // TODO: anything more useful we can put in this message?
         byte[] message = "signed by SignApk".getBytes("UTF-8");
         temp.write(message);
         temp.write(0);
         writeSignatureBlock(signature, publicKey, temp);
         int total_size = temp.size() + 6;
         if (total_size > 0xffff) {
             throw new IllegalArgumentException("signature is too big for ZIP file comment");
         }
         // signature starts this many bytes from the end of the file
         int signature_start = total_size - message.length - 1;
         temp.write(signature_start & 0xff);
         temp.write((signature_start >> 8) & 0xff);
         // Why the 0xff bytes?  In a zip file with no archive comment,
         // bytes [-6:-2] of the file are the little-endian offset from
         // the start of the file to the central directory.  So for the
         // two high bytes to be 0xff 0xff, the archive would have to
         // be nearly 4GB in side.  So it's unlikely that a real
         // commentless archive would have 0xffs here, and lets us tell
         // an old signed archive from a new one.
         temp.write(0xff);
         temp.write(0xff);
         temp.write(total_size & 0xff);
         temp.write((total_size >> 8) & 0xff);
         temp.flush();

         // Signature verification checks that the EOCD header is the
         // last such sequence in the file (to avoid minzip finding a
         // fake EOCD appended after the signature in its scan).  The
         // odds of producing this sequence by chance are very low, but
         // let's catch it here if it does.
         byte[] b = temp.toByteArray();
         for (int i = 0; i < b.length-3; ++i) {
             if (b[i] == 0x50 && b[i+1] == 0x4b && b[i+2] == 0x05 && b[i+3] == 0x06) {
                 throw new IllegalArgumentException("found spurious EOCD header at " + i);
             }
         }

         outputStream.write(zipData, 0, zipData.length-2);
         outputStream.write(total_size & 0xff);
         outputStream.write((total_size >> 8) & 0xff);
         temp.writeTo(outputStream);
     }

     /**
      * Copy all the files in a manifest from input to output.  We set
      * the modification times in the output to a fixed time, so as to
      * reduce variation in the output file and make incremental OTAs
      * more efficient.
      */
     private static void copyFiles(Manifest manifest,
         JarFile in, JarOutputStream out, long timestamp) throws IOException {
         byte[] buffer = new byte[4096];
         int num;

         Map<String, Attributes> entries = manifest.getEntries();
         List<String> names = new ArrayList(entries.keySet());
         Collections.sort(names);
         for (String name : names) {
             JarEntry inEntry = in.getJarEntry(name);
             JarEntry outEntry = null;
             if (inEntry.getMethod() == JarEntry.STORED) {
                 // Preserve the STORED method of the input entry.
                 outEntry = new JarEntry(inEntry);
             } else {
                 // Create a new entry so that the compressed len is recomputed.
                 outEntry = new JarEntry(name);
             }
             outEntry.setTime(timestamp);
             out.putNextEntry(outEntry);

             InputStream data = in.getInputStream(inEntry);
             while ((num = data.read(buffer)) > 0) {
                 out.write(buffer, 0, num);
             }
             out.flush();
         }
     }

     public static void main(String[] args) {
         if (args.length != 4 && args.length != 5) {
             System.err.println("Usage: signapk [-w] " +
                     "publickey.x509[.pem] privatekey.pk8 " +
                     "input.jar output.jar");
             System.exit(2);
         }

         boolean signWholeFile = false;
         int argstart = 0;
         if (args[0].equals("-w")) {
             signWholeFile = true;
             argstart = 1;
         }

         JarFile inputJar = null;
         JarOutputStream outputJar = null;
         FileOutputStream outputFile = null;

         try {
             X509Certificate publicKey = readPublicKey(new File(args[argstart+0]));

             // Assume the certificate is valid for at least an hour.
             long timestamp = publicKey.getNotBefore().getTime() + 3600L * 1000;

             PrivateKey privateKey = readPrivateKey(new File(args[argstart+1]));
             inputJar = new JarFile(new File(args[argstart+2]), false);  // Don't verify.

             OutputStream outputStream = null;
             if (signWholeFile) {
                 outputStream = new ByteArrayOutputStream();
             } else {
                 outputStream = outputFile = new FileOutputStream(args[argstart+3]);
             }
             outputJar = new JarOutputStream(outputStream);
             outputJar.setLevel(9);

             JarEntry je;

             // MANIFEST.MF
             Manifest manifest = addDigestsToManifest(inputJar);
             je = new JarEntry(JarFile.MANIFEST_NAME);
             je.setTime(timestamp);
             outputJar.putNextEntry(je);
             manifest.write(outputJar);

             // CERT.SF
             Signature signature = Signature.getInstance("SHA1withRSA");
             signature.initSign(privateKey);
             je = new JarEntry(CERT_SF_NAME);
             je.setTime(timestamp);
             outputJar.putNextEntry(je);
             writeSignatureFile(manifest,
                     new SignatureOutputStream(outputJar, signature));

             // CERT.RSA
             je = new JarEntry(CERT_RSA_NAME);
             je.setTime(timestamp);
             outputJar.putNextEntry(je);
             writeSignatureBlock(signature, publicKey, outputJar);

             // Everything else
             copyFiles(manifest, inputJar, outputJar, timestamp);

             outputJar.close();
             outputJar = null;
             outputStream.flush();

             if (signWholeFile) {
                 outputFile = new FileOutputStream(args[argstart+3]);
                 signWholeOutputFile(((ByteArrayOutputStream)outputStream).toByteArray(),
                                     outputFile, publicKey, privateKey);
             }
         } catch (Exception e) {
             e.printStackTrace();
             System.exit(1);
         } finally {
             try {
                 if (inputJar != null) inputJar.close();
                 if (outputFile != null) outputFile.close();
             } catch (IOException e) {
                 e.printStackTrace();
                 System.exit(1);
             }
         }
     }
 }
	/*
	* Copyright (C) 2008 The Android Open Source Project
	*
	* Licensed under the Apache License, Version 2.0 (the "License");
	* you may not use this file except in compliance with the License.
	* You may obtain a copy of the License at
	*
	* http://www.apache.org/licenses/LICENSE-2.0
	*
	* Unless required by applicable law or agreed to in writing, software
	* distributed under the License is distributed on an "AS IS" BASIS,
	* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
	* See the License for the specific language governing permissions and
	* limitations under the License.
	*/

	package com.android.signapk;

	import sun.misc.BASE64Encoder;
	import sun.security.pkcs.ContentInfo;
	import sun.security.pkcs.PKCS7;
	import sun.security.pkcs.SignerInfo;
	import sun.security.x509.AlgorithmId;
	import sun.security.x509.X500Name;

	import java.io.BufferedReader;
	import java.io.ByteArrayOutputStream;
	import java.io.DataInputStream;
	import java.io.File;
	import java.io.FileInputStream;
	import java.io.FileOutputStream;
	import java.io.FilterOutputStream;
	import java.io.IOException;
	import java.io.InputStream;
	import java.io.InputStreamReader;
	import java.io.OutputStream;
	import java.io.PrintStream;
	import java.security.AlgorithmParameters;
	import java.security.DigestOutputStream;
	import java.security.GeneralSecurityException;
	import java.security.Key;
	import java.security.KeyFactory;
	import java.security.MessageDigest;
	import java.security.PrivateKey;
	import java.security.Signature;
	import java.security.SignatureException;
	import java.security.cert.Certificate;
	import java.security.cert.CertificateFactory;
	import java.security.cert.X509Certificate;
	import java.security.spec.InvalidKeySpecException;
	import java.security.spec.KeySpec;
	import java.security.spec.PKCS8EncodedKeySpec;
	import java.util.ArrayList;
	import java.util.Collections;
	import java.util.Date;
	import java.util.Enumeration;
	import java.util.List;
	import java.util.Map;
	import java.util.TreeMap;
	import java.util.jar.Attributes;
	import java.util.jar.JarEntry;
	import java.util.jar.JarFile;
	import java.util.jar.JarOutputStream;
	import java.util.jar.Manifest;
	import java.util.regex.Pattern;
	import javax.crypto.Cipher;
	import javax.crypto.EncryptedPrivateKeyInfo;
	import javax.crypto.SecretKeyFactory;
	import javax.crypto.spec.PBEKeySpec;

	/**
	* Command line tool to sign JAR files (including APKs and OTA updates) in
	* a way compatible with the mincrypt verifier, using SHA1 and RSA keys.
	*/
	class SignApk {
	private static final String CERT_SF_NAME = "META-INF/CERT.SF";
	private static final String CERT_RSA_NAME = "META-INF/CERT.RSA";

	// Files matching this pattern are not copied to the output.
	private static Pattern stripPattern =
	Pattern.compile("^META-INF/(.*)[.](SF\|RSA\|DSA)$");

	private static X509Certificate readPublicKey(File file)
	throws IOException, GeneralSecurityException {
	FileInputStream input = new FileInputStream(file);
	try {
	CertificateFactory cf = CertificateFactory.getInstance("X.509");
	return (X509Certificate) cf.generateCertificate(input);
	} finally {
	input.close();
	}
	}

	/**
	* Reads the password from stdin and returns it as a string.
	*
	* @param keyFile The file containing the private key. Used to prompt the user.
	*/
	private static String readPassword(File keyFile) {
	// TODO: use Console.readPassword() when it's available.
	System.out.print("Enter password for " + keyFile + " (password will not be hidden): ");
	System.out.flush();
	BufferedReader stdin = new BufferedReader(new InputStreamReader(System.in));
	try {
	return stdin.readLine();
	} catch (IOException ex) {
	return null;
	}
	}

	/**
	* Decrypt an encrypted PKCS 8 format private key.
	*
	* Based on ghstark's post on Aug 6, 2006 at
	* http://forums.sun.com/thread.jspa?threadID=758133&messageID=4330949
	*
	* @param encryptedPrivateKey The raw data of the private key
	* @param keyFile The file containing the private key
	*/
	private static KeySpec decryptPrivateKey(byte[] encryptedPrivateKey, File keyFile)
	throws GeneralSecurityException {
	EncryptedPrivateKeyInfo epkInfo;
	try {
	epkInfo = new EncryptedPrivateKeyInfo(encryptedPrivateKey);
	} catch (IOException ex) {
	// Probably not an encrypted key.
	return null;
	}

	char[] password = readPassword(keyFile).toCharArray();

	SecretKeyFactory skFactory = SecretKeyFactory.getInstance(epkInfo.getAlgName());
	Key key = skFactory.generateSecret(new PBEKeySpec(password));

	Cipher cipher = Cipher.getInstance(epkInfo.getAlgName());
	cipher.init(Cipher.DECRYPT_MODE, key, epkInfo.getAlgParameters());

	try {
	return epkInfo.getKeySpec(cipher);
	} catch (InvalidKeySpecException ex) {
	System.err.println("signapk: Password for " + keyFile + " may be bad.");
	throw ex;
	}
	}

	/** Read a PKCS 8 format private key. */
	private static PrivateKey readPrivateKey(File file)
	throws IOException, GeneralSecurityException {
	DataInputStream input = new DataInputStream(new FileInputStream(file));
	try {
	byte[] bytes = new byte[(int) file.length()];
	input.read(bytes);

	KeySpec spec = decryptPrivateKey(bytes, file);
	if (spec == null) {
	spec = new PKCS8EncodedKeySpec(bytes);
	}

	try {
	return KeyFactory.getInstance("RSA").generatePrivate(spec);
	} catch (InvalidKeySpecException ex) {
	return KeyFactory.getInstance("DSA").generatePrivate(spec);
	}
	} finally {
	input.close();
	}
	}

	/** Add the SHA1 of every file to the manifest, creating it if necessary. */
	private static Manifest addDigestsToManifest(JarFile jar)
	throws IOException, GeneralSecurityException {
	Manifest input = jar.getManifest();
	Manifest output = new Manifest();
	Attributes main = output.getMainAttributes();
	if (input != null) {
	main.putAll(input.getMainAttributes());
	} else {
	main.putValue("Manifest-Version", "1.0");
	main.putValue("Created-By", "1.0 (Android SignApk)");
	}

	BASE64Encoder base64 = new BASE64Encoder();
	MessageDigest md = MessageDigest.getInstance("SHA1");
	byte[] buffer = new byte[4096];
	int num;

	// We sort the input entries by name, and add them to the
	// output manifest in sorted order. We expect that the output
	// map will be deterministic.

	TreeMap<String, JarEntry> byName = new TreeMap<String, JarEntry>();

	for (Enumeration<JarEntry> e = jar.entries(); e.hasMoreElements(); ) {
	JarEntry entry = e.nextElement();
	byName.put(entry.getName(), entry);
	}

	for (JarEntry entry: byName.values()) {
	String name = entry.getName();
	if (!entry.isDirectory() && !name.equals(JarFile.MANIFEST_NAME) &&
	!name.equals(CERT_SF_NAME) && !name.equals(CERT_RSA_NAME) &&
	(stripPattern == null \|\|
	!stripPattern.matcher(name).matches())) {
	InputStream data = jar.getInputStream(entry);
	while ((num = data.read(buffer)) > 0) {
	md.update(buffer, 0, num);
	}

	Attributes attr = null;
	if (input != null) attr = input.getAttributes(name);
	attr = attr != null ? new Attributes(attr) : new Attributes();
	attr.putValue("SHA1-Digest", base64.encode(md.digest()));
	output.getEntries().put(name, attr);
	}
	}

	return output;
	}

	/** Write to another stream and also feed it to the Signature object. */
	private static class SignatureOutputStream extends FilterOutputStream {
	private Signature mSignature;
	private int mCount;

	public SignatureOutputStream(OutputStream out, Signature sig) {
	super(out);
	mSignature = sig;
	mCount = 0;
	}

	@Override
	public void write(int b) throws IOException {
	try {
	mSignature.update((byte) b);
	} catch (SignatureException e) {
	throw new IOException("SignatureException: " + e);
	}
	super.write(b);
	mCount++;
	}

	@Override
	public void write(byte[] b, int off, int len) throws IOException {
	try {
	mSignature.update(b, off, len);
	} catch (SignatureException e) {
	throw new IOException("SignatureException: " + e);
	}
	super.write(b, off, len);
	mCount += len;
	}

	public int size() {
	return mCount;
	}
	}

	/** Write a .SF file with a digest of the specified manifest. */
	private static void writeSignatureFile(Manifest manifest, SignatureOutputStream out)
	throws IOException, GeneralSecurityException {
	Manifest sf = new Manifest();
	Attributes main = sf.getMainAttributes();
	main.putValue("Signature-Version", "1.0");
	main.putValue("Created-By", "1.0 (Android SignApk)");

	BASE64Encoder base64 = new BASE64Encoder();
	MessageDigest md = MessageDigest.getInstance("SHA1");
	PrintStream print = new PrintStream(
	new DigestOutputStream(new ByteArrayOutputStream(), md),
	true, "UTF-8");

	// Digest of the entire manifest
	manifest.write(print);
	print.flush();
	main.putValue("SHA1-Digest-Manifest", base64.encode(md.digest()));

	Map<String, Attributes> entries = manifest.getEntries();
	for (Map.Entry<String, Attributes> entry : entries.entrySet()) {
	// Digest of the manifest stanza for this entry.
	print.print("Name: " + entry.getKey() + "\r\n");
	for (Map.Entry<Object, Object> att : entry.getValue().entrySet()) {
	print.print(att.getKey() + ": " + att.getValue() + "\r\n");
	}
	print.print("\r\n");
	print.flush();

	Attributes sfAttr = new Attributes();
	sfAttr.putValue("SHA1-Digest", base64.encode(md.digest()));
	sf.getEntries().put(entry.getKey(), sfAttr);
	}

	sf.write(out);

	// A bug in the java.util.jar implementation of Android platforms
	// up to version 1.6 will cause a spurious IOException to be thrown
	// if the length of the signature file is a multiple of 1024 bytes.
	// As a workaround, add an extra CRLF in this case.
	if ((out.size() % 1024) == 0) {
	out.write('\r');
	out.write('\n');
	}
	}

	/** Write a .RSA file with a digital signature. */
	private static void writeSignatureBlock(
	Signature signature, X509Certificate publicKey, OutputStream out)
	throws IOException, GeneralSecurityException {
	SignerInfo signerInfo = new SignerInfo(
	new X500Name(publicKey.getIssuerX500Principal().getName()),
	publicKey.getSerialNumber(),
	AlgorithmId.get("SHA1"),
	AlgorithmId.get("RSA"),
	signature.sign());

	PKCS7 pkcs7 = new PKCS7(
	new AlgorithmId[] { AlgorithmId.get("SHA1") },
	new ContentInfo(ContentInfo.DATA_OID, null),
	new X509Certificate[] { publicKey },
	new SignerInfo[] { signerInfo });

	pkcs7.encodeSignedData(out);
	}

	private static void signWholeOutputFile(byte[] zipData,
	OutputStream outputStream,
	X509Certificate publicKey,
	PrivateKey privateKey)
	throws IOException, GeneralSecurityException {

	// For a zip with no archive comment, the
	// end-of-central-directory record will be 22 bytes long, so
	// we expect to find the EOCD marker 22 bytes from the end.
	if (zipData[zipData.length-22] != 0x50 \|\|
	zipData[zipData.length-21] != 0x4b \|\|
	zipData[zipData.length-20] != 0x05 \|\|
	zipData[zipData.length-19] != 0x06) {
	throw new IllegalArgumentException("zip data already has an archive comment");
	}

	Signature signature = Signature.getInstance("SHA1withRSA");
	signature.initSign(privateKey);
	signature.update(zipData, 0, zipData.length-2);

	ByteArrayOutputStream temp = new ByteArrayOutputStream();

	// put a readable message and a null char at the start of the
	// archive comment, so that tools that display the comment
	// (hopefully) show something sensible.
	// TODO: anything more useful we can put in this message?
	byte[] message = "signed by SignApk".getBytes("UTF-8");
	temp.write(message);
	temp.write(0);
	writeSignatureBlock(signature, publicKey, temp);
	int total_size = temp.size() + 6;
	if (total_size > 0xffff) {
	throw new IllegalArgumentException("signature is too big for ZIP file comment");
	}
	// signature starts this many bytes from the end of the file
	int signature_start = total_size - message.length - 1;
	temp.write(signature_start & 0xff);
	temp.write((signature_start >> 8) & 0xff);
	// Why the 0xff bytes? In a zip file with no archive comment,
	// bytes [-6:-2] of the file are the little-endian offset from
	// the start of the file to the central directory. So for the
	// two high bytes to be 0xff 0xff, the archive would have to
	// be nearly 4GB in side. So it's unlikely that a real
	// commentless archive would have 0xffs here, and lets us tell
	// an old signed archive from a new one.
	temp.write(0xff);
	temp.write(0xff);
	temp.write(total_size & 0xff);
	temp.write((total_size >> 8) & 0xff);
	temp.flush();

	// Signature verification checks that the EOCD header is the
	// last such sequence in the file (to avoid minzip finding a
	// fake EOCD appended after the signature in its scan). The
	// odds of producing this sequence by chance are very low, but
	// let's catch it here if it does.
	byte[] b = temp.toByteArray();
	for (int i = 0; i < b.length-3; ++i) {
	if (b[i] == 0x50 && b[i+1] == 0x4b && b[i+2] == 0x05 && b[i+3] == 0x06) {
	throw new IllegalArgumentException("found spurious EOCD header at " + i);
	}
	}

	outputStream.write(zipData, 0, zipData.length-2);
	outputStream.write(total_size & 0xff);
	outputStream.write((total_size >> 8) & 0xff);
	temp.writeTo(outputStream);
	}

	/**
	* Copy all the files in a manifest from input to output. We set
	* the modification times in the output to a fixed time, so as to
	* reduce variation in the output file and make incremental OTAs
	* more efficient.
	*/
	private static void copyFiles(Manifest manifest,
	JarFile in, JarOutputStream out, long timestamp) throws IOException {
	byte[] buffer = new byte[4096];
	int num;

	Map<String, Attributes> entries = manifest.getEntries();
	List<String> names = new ArrayList(entries.keySet());
	Collections.sort(names);
	for (String name : names) {
	JarEntry inEntry = in.getJarEntry(name);
	JarEntry outEntry = null;
	if (inEntry.getMethod() == JarEntry.STORED) {
	// Preserve the STORED method of the input entry.
	outEntry = new JarEntry(inEntry);
	} else {
	// Create a new entry so that the compressed len is recomputed.
	outEntry = new JarEntry(name);
	}
	outEntry.setTime(timestamp);
	out.putNextEntry(outEntry);

	InputStream data = in.getInputStream(inEntry);
	while ((num = data.read(buffer)) > 0) {
	out.write(buffer, 0, num);
	}
	out.flush();
	}
	}

	public static void main(String[] args) {
	if (args.length != 4 && args.length != 5) {
	System.err.println("Usage: signapk [-w] " +
	"publickey.x509[.pem] privatekey.pk8 " +
	"input.jar output.jar");
	System.exit(2);
	}

	boolean signWholeFile = false;
	int argstart = 0;
	if (args[0].equals("-w")) {
	signWholeFile = true;
	argstart = 1;
	}

	JarFile inputJar = null;
	JarOutputStream outputJar = null;
	FileOutputStream outputFile = null;

	try {
	X509Certificate publicKey = readPublicKey(new File(args[argstart+0]));

	// Assume the certificate is valid for at least an hour.
	long timestamp = publicKey.getNotBefore().getTime() + 3600L * 1000;

	PrivateKey privateKey = readPrivateKey(new File(args[argstart+1]));
	inputJar = new JarFile(new File(args[argstart+2]), false); // Don't verify.

	OutputStream outputStream = null;
	if (signWholeFile) {
	outputStream = new ByteArrayOutputStream();
	} else {
	outputStream = outputFile = new FileOutputStream(args[argstart+3]);
	}
	outputJar = new JarOutputStream(outputStream);
	outputJar.setLevel(9);

	JarEntry je;

	// MANIFEST.MF
	Manifest manifest = addDigestsToManifest(inputJar);
	je = new JarEntry(JarFile.MANIFEST_NAME);
	je.setTime(timestamp);
	outputJar.putNextEntry(je);
	manifest.write(outputJar);

	// CERT.SF
	Signature signature = Signature.getInstance("SHA1withRSA");
	signature.initSign(privateKey);
	je = new JarEntry(CERT_SF_NAME);
	je.setTime(timestamp);
	outputJar.putNextEntry(je);
	writeSignatureFile(manifest,
	new SignatureOutputStream(outputJar, signature));

	// CERT.RSA
	je = new JarEntry(CERT_RSA_NAME);
	je.setTime(timestamp);
	outputJar.putNextEntry(je);
	writeSignatureBlock(signature, publicKey, outputJar);

	// Everything else
	copyFiles(manifest, inputJar, outputJar, timestamp);

	outputJar.close();
	outputJar = null;
	outputStream.flush();

	if (signWholeFile) {
	outputFile = new FileOutputStream(args[argstart+3]);
	signWholeOutputFile(((ByteArrayOutputStream)outputStream).toByteArray(),
	outputFile, publicKey, privateKey);
	}
	} catch (Exception e) {
	e.printStackTrace();
	System.exit(1);
	} finally {
	try {
	if (inputJar != null) inputJar.close();
	if (outputFile != null) outputFile.close();
	} catch (IOException e) {
	e.printStackTrace();
	System.exit(1);
	}
	}
	}
	}